publications

2021

1. Measurement error models: from nonparametric methods to deep neural networks

   Hu, Zhirui, Ke, Zheng Tracy, and Liu, Jun S

   2021
2. A RIPK1-regulated inflammatory microglial state in amyotrophic lateral sclerosis

   Mifflin, Lauren, Hu, Zhirui, Dufort, Connor, Hession, Cynthia C., Walker, Alec J., Niu, Kongyan, Zhu, Hong, Liu, Nan, Liu, Jun S., Levin, Joshua Z., Stevens, Beth, Yuan, Junying, and Zou, Chengyu

   Proceedings of the National Academy of Sciences 2021

2020

1. SIMPLEs: a single-cell RNA sequencing imputation strategy preserving gene modules and cell clusters variation

   Hu, Zhirui, Zu, Songpeng, and Liu, Jun S

   NAR Genomics and Bioinformatics 2020
2. Modeling Stochastic Variability in Multiband Time-series Data

   Hu, Zhirui, and Tak, Hyungsuk

   The Astronomical Journal 2020
3. Reduction of mNAT1/hNAT2 Contributes to Cerebral Endothelial Necroptosis and Aβ Accumulation in Alzheimer’s Disease

   Zou, Chengyu, Mifflin, Lauren, Hu, Zhirui, Zhang, Tian, Shan, Bing, Wang, Huibing, Xing, Xin, Zhu, Hong, Adiconis, Xian, Levin, Joshua Z., Li, Fupeng, Liu, Chuan-Fa, Liu, Jun S., and Yuan, Junying

   Cell Reports 2020

2019

1. Convergent regulatory evolution and loss of flight in paleognathous birds

   Sackton, Timothy B., Grayson, Phil, Cloutier, Alison, Hu, Zhirui, Liu, Jun S., Wheeler, Nicole E., Gardner, Paul P., Clarke, Julia A., Baker, Allan J., Clamp, Michele, and Edwards, Scott V.

   Science 2019
2. Bayesian Detection of Convergent Rate Changes of Conserved Noncoding Elements on Phylogenetic Trees

   Hu, Zhirui, Sackton, Timothy B, Edwards, Scott V, and Liu, Jun S

   Molecular Biology and Evolution 2019

2015

1. 3CPET: finding co-factor complexes from ChIA-PET data using a hierarchical Dirichlet process

   Djekidel, Mohamed Nadhir, Liang, Zhengyu, Wang, Qi, Hu, Zhirui, Li, Guipeng, Chen, Yang, and Zhang, Michael Q.

   2015

2014

1. Head, modifier, and constraint detection in short texts

   Wang, Zhongyuan, Wang, Haixun, and Hu, Zhirui

   In 2014 IEEE 30th International Conference on Data Engineering 2014